Human Genome Index STAR error killed 9
Hi guys,
I am trying to run the STAR aligner to create the human genome index before proceeding to the alignment step. After approximately one hour and half the command stopped and showed this: killed 9.
This is my command:
STAR --runMode genomeGenerate --genomeDir ref/Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa --genomeFastaFiles Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa --sjdbGTFfile Homo_sapiesn.GRch38.105.gtf --runThreadN 16 (and I also tried runThreadN 1)
Could anyone help me please figuring out what the problem is. I am on Mac sierra (bash terminal).
Thanks.
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