There is no consensus sequence, and all the contigs are part of the whole genome. In most cases it is difficult to obtain a single, complete genomic sequence. Instead, we get a certain number of fragments. For high quality assemblies the number of contigs will be low, but assemblies are still useful even with hundreds of contigs.
OK. Thanks for your answer. I read a paper where they constructed tree from whole genome sequence. https://www.pnas.org/content/114/35/9391
Unable to understand how they got the whole genome sequence. Did they concatenate the individual sequences to get it?
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