More posts like this
-
Doubt on annotation of ensembl ids in biomart using R
written by Josh •Hi All :) I have a large list of unique ENSEMBL IDs (48,432) representing mouse genes, **my goal only is to get attributes like gene …
-
Retrieve only protein coding esnsemble gene ids and gene symbols
written by iibrams07 •I tried without success different ways to retrieve the current list of ensemble gene ids including the gene symbol for only protein coding genes by …
-
biomart returns several ensembl ids for one gene
written by fifty_fifty •I have to convert the gene names in my scRNA-seq data into ensembl IDs for downstream analyses. I used biomaRt package which converted some of …
-
Multiple ensembl gene ID for the same gene name (Symbol), how to deal with this while differential …
written by Swarna Kanchan •Dear all, I am processing my RNA-seq data, during processing I observed multiple ensembl gene IDs for the same gene name (symbol). I went into …
-
Converting Gene Symbol to Ensembl ID in R
written by Harry_Wat •When I converted my gene symbol list to Ensembl ID, I found that the relationship with gene symbol and Ensemble ID is not a one-to-one …
-
Different Ensembl Ids point to the same gene symbol.
written by elefth.pavlos •Hi all, I have a matrix with RNA-seq counts of reads. Ensemble gene IDs in rows, samples in columns. I want to check for differential …
-
Converting Ensembl stable ids to symbol, is version ID important for expression data?
written by Berghopper •Dear Bioconductor, For my project I want to analyze a bunch of long non-coding RNA's (lncRNA) with TCGA (filters: transcriptome profiling, gene expression quantification, RNA-seq, …
-
Why am I getting different ensembl gene ids for a given gene symbol?
written by ravihansa82<p>dear friends</p> <p>I have set of gene symbols. when I convert such symbols to appropriate ensembl gene ids, it gave me different gene ids for …
-
Why does biomart return multiple Entrez IDs
written by hdy<p>I am using biomart to convert multiple gene names to Entrez IDs, however, I found that for some gene names, it returned multiple IDs. Shouldn't …
-
Some Ensp Ids Not Converting To Hgnc Symbol In Biomart
written by ismeet.kaur •I am not able to convert some of the ENSP IDs to HGNC symbol using Biomart, but when searching for those IDs in Ensembl database …