Heys,
I calculated several trees for different parts of the genome for the same labels (tips) and I would like to plot it as here:
I don't mind the mitochondrial tree, what I would like to do is to plot in darker black the consensus tree and more blurred all the other trees that I calculated to get the consensus tree. I tried the densiTree function from phangorn in R, but the results are not visually nice. In the paper where I obtained this image they mentioned that they "Branch lengths were scaled for visualization so that the total height of each tree is the same." So, how I could scale the branch length? If not, do you know any other way to plot a similar thing to this one? I would be extremely grateful!
Thanks in advance!
0 answers
No answers yet.
Log in to answer this question.
-
Adding shapes from plotly R library to the phylogenetic tree tips generated by ggtree
written by Hann
-
How do I add circles to the tips of a phylogenetic tree that have white fill and a black border in …
written by Namenlos •
-
plotting trees in R: node labels from nexus tree files
written by jmah •
-
Force same scale on different phylogenetic trees
written by hakon.kaspersen •
-
Adding branch lengths to a topology
written by treesandthings •
-
plot and show support values in consensus tree from n nj euclidean distance matrix replicates
written by jlsovaz •
-
Combine node/branch labels from multiple trees into one
written by al-ash
-
R phangorn phylogenetic analysis from somatic mutations' binary table
written by Alejandro Jimenez Sanchez
-
input tree for CAFE phylogenetic analysis
written by deepkumar1983 •
-
How To Get A Consensus Tree
written by Boyang •
