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The judgement of TP between the vcf files using vcfeval. Are 0/1 and 1/0 the same by using rtg tools vcfeval

Hi,

I was trying to do vcfeval to do the concordance between two vcf files. I think 0/1 and 1/0 would be the same. But I don't know how the vcfeval would do. Will they be treated as different? Does someone know that?

Thank you.

vcfeval rtg

1 answer

If they are unphased (i.e. separated by a / rather than a |, which means they are reversible), then yes, they will be treated as the same.

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