This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Error in running Splice Site Prediction by Neural Network

Hello everyone

I am trying to run Splice Site Prediction by Neural Network on system, when running online with the fasta it runs fine. But when I try to run it on my system it gives following error.

Traceback (most recent call last):
  File "neural_network_splice.py", line 308, in <module>
    (training_set, training_targets, test_set, test_targets) = get_preprocessed_data(file_name)
  File "neural_network_splice.py", line 56, in get_preprocessed_data
    target_vector = extract_target_values(dataset)
  File "neural_network_splice.py", line 16, in extract_target_values
    return [int(value) for value in input_data[::2]]
ValueError: invalid literal for int() with base 10: 'ACAGCAGCTCTACCCCTCACGACGCAGACATGGCAGCGCAGAAGGACCAGCAGAAAGATGCCGAGGCGGA'

I am running anaconda environment with python version 2.7.

Thanks in advance guys!

python neural-network splice-site-prediction

Not reproducible. You do not even mention the tool. Probably it needs python3.

0 answers

No answers yet.

Log in to answer this question.