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How To Find Ld Block For Given Snp

I have a difficulty in finding LD block for set of SNPs. For example, rs1001611 has LD block chr19:45187865-45516167. But for rs10002235, rs10031715, ... dont know. Please help me in this topic.

ld snp
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updated by chrchang523 chrchang523 • written by SVV • SVV

1 answer

If you want to define blocks from scratch, the latest PLINK 1.9 development build includes the --blocks command for this job, which defines LD blocks using Haploview's default settings. Haploview also supports several other ways of defining LD blocks.

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written by chrchang523 chrchang523

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