Thanks a lot.
• 0 views
•
link
written
by
nonaddldy •
How can I makedatabase for env_nt.tar.gz (from NCBI ftp site) in Diamond
I unzip series of env_nt*.tar.gz, and put them into the integrated files according to the format; When I applied "diamond makedb", the output was like the first figure showed "No such file or directory....".
When I did not unzip the .gz files, the output was like the second figure showed "FASTA format error: Missing '>' at record start".
So should I transfer the .gz file into FASTA format?
• 1,612 views
•
link
written
by
nonaddldy •
1 answer
You do not need to. If you upgrade to the latest version of DIAMOND it is able to use NCBI blast pre-formatted databases (see: Creation of subset of diamond database ) Make sure you upgrade to v.2.0.8 or better.
Log in to answer this question.
More posts like this
-
Asking for source of the figure
written by 张炘荣 •
-
How to do preprocessing from fastqc
written by Lulu •
-
nanopore data analysis methylation modification
written by Domi •
-
affy expression array data
written by liuyibin2005 •
-
original single cell data downloaded from GEO yielded only two files with 150bp
written by chenglei1865 •
-
how to costum the color palette for ggplot2
written by Qianjiang(QJ) Hu •
-
What is "pident" (percentage of identical matches) in the "Diamond" protein alignment ?
written by Alexander •
-
How to aviod auto wrap in the .txt output of long rbind list?
written by nonaddldy •
-
DNA methylation analysis package "Minfi"
written by soyeon •
-
[Errno 2] No such file or directory: '0-rawreads' when I run Falcon unzip with hifi data
written by Feng •
