(ERR): hisat2-align died with signal 6 (ABRT) (core dumped)
Hi, run hisat2 ,I encountered an error.
hisat2-build -p 10 ~/public_data/genome/Pt_V1.0.fa genome 1>hisat2-build.log 2>&1
~/software/hisat2-2.2.0/hisat2 \
-x genome \
-1 ~/data/clean/NC1_5_clean_R1.fastq.gz \
-2 ~/data/clean/NC1_5_clean_R2.fastq.gz \
-S NC1_5.sam \
1>NC1_5.log 2>&1
cat NC1_5.log
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
(ERR): hisat2-align died with signal 6 (ABRT) (core dumped)
thanks
• 2,285 views
•
link
0 answers
No answers yet.
Log in to answer this question.
Your job is likely running out of memory.