RNA-seq profiling of S. cerevisiae fermentation
I am looking for a database of RNA-seq libraries sampled at various time points during a batch culture of wild type Saccharomyces cerevisiae. Hopefully, the database has RNA-seq samples at lag, exponential, stationary, and death phases of a culture prepared using a defined medium. Thanks in advance for your time.
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Your best bet is to search SRA using
sra-explorer(LINK).sra-explorer : find SRA and FastQ download URLs in a couple of clicks
Thanks, GenoMax. Using your recommendation I've found a good candidate.
You could also used advanced search at GEO, by modifying these terms: "Saccharomyces cerevisiae"[Organism] AND expression profiling by high throughput sequencing[DataSet Type] AND exponential[All Fields] which currently returns 98 studies.
Thanks, Seidel. I was a bit overwhelmed by the large amounts of results. So far, this is the best that I've found.
That looks like a good one.