Bash script to help with print Name of reads that only have query subsequence or its verse complement and position of first occurance of this subsequence in read and output of all this in tab separat
Create bash script that receives name of fastq fastq file and query subsequence or its reverse conmplement and the position of first occurrence of this subsequence in read all these are input directed into output file in tabular format For easier interpretation
Please somebody helps it's too difficult
• 1,494 views
•
link
updated
by
Mark
•
written
by
Hosny.yasmine123 •
•
written
by
Hosny.yasmine123 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Trying to write bwa mem -> samtools view -> samtools sort loop
written by Lee •
-
Issues with bash script and seqkit and awk
written by Hosny.yasmine123 •
-
How to use seqff.r script (estimating fetal fraction)
written by Lucas •
-
Qiime2 manifest file for multiple pair end read
written by Bioinfonext
-
usearch length trimming
written by n.elsahly •
-
bioawk output in original fastq format
written by weixiaokuan
-
all the peaks of MACS2 BED file starting at position 0
written by salamandra
-
How to craete snps map file?
written by forever
-
Non-overlapping Illumnia Runs
written by branch.lizard •
-
get protein sequence from ID
written by arronslacey
I (and likely others) can imagine this is not straightforward for a novice, but nonetheless we would appreciate if you show some effort.
what have you tried already? did you look up what you perhaps could do?
might be harsh to say, but we're not here to do the work for you! We are here to help you when you are stuck or have very specific question on a certain topic/issue
To be honest, this sounds like a homework exercise...