Error: long vectors not supported yet in Monocle 2

Hi,

I would like to run monocle 2 on my dataset that is 130 000 cells. I have been able to convert my seurat object to a CDS using as.CellDataSet function. When trying to orderCells, I am getting this error:

Object_CDS <- orderCells(Object_CDS)
Error in graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted,  : 
  long vectors not supported yet: ../../src/include/Rinlinedfuns.h:537
Calls: orderCells ... project2MST -> graph.adjacency -> graph.adjacency.dense

Could you please help me with that issue?

Thanks

monocle monocle2

• 2,329 views • link

updated 3.2 years ago by Ram

• written 4.7 years ago by jason.ossart •

Hi, I have the same problem, I have 60K cells. Do you solve it now?

• 0 views • link

updated 3.2 years ago by Ram

• written 4.4 years ago by 787685856 •

0 answers

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