I want to calculate fold change values from the GSM data.
For example, under GSE8158 there are many samples available like the image below:
The only file that is available under each GSM sample is a .gpr file as well as the datatable values like this:
How can I calculate the fold change from the GSM samples supposing that 0h file is the control and the 6h, 12h, 24h, 48h, 96h files are the sample files? Thanks in advance.
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teeteen •
1 answer
Use GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions. Results are presented as a table of genes ordered by significance (including logFC).
https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE8158&platform=GPL1901
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