This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Operon Predict on novel bacterial isolates

I would like to predict operons or transcription units on a newly assembled genome. Currently the strain have been assembled and annotated, RNAseq is also available as well as proteomics evidence.

What would be the best approach to infer transcription units?

The question is if potential genes are being co-expressed as a transcription unit.

rnaseq genomics operon prediction proteomics
• 1,025 views • link
updated by Kevin Blighe Kevin Blighe • written by mdvs • mdvs

1 answer

Hello and good morning, afternoon, or evening,

Rockhopper can do this for you, but starting from the raw FASTQ files: https://cs.wellesley.edu/~btjaden/Rockhopper/

Kevin

• 0 views • link
written by Kevin Blighe Kevin Blighe

Log in to answer this question.

More posts like this