Change names of all sequences in a MSA
I have a multiple sequence alignment where the names for each sequences are as follows
>gi|AF266048.1|taxonid|126164|organism|Macromia splendens|seqid|AF266048.1|description|Macromia splendens small subunit ribosomal RNA gene partial sequence; mitochondrial gene for mitochondrial product
What I'd like is to have >Macromia_splendens. I'm not sure how to change this for the entire file.
1 answer
have a look at some basic linux command line tools, with special focus on sed I would say
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