I'm running a bioinformatic tool called ltr finder, when I ran the command bellow

   ltr_finder $DATA/$organis_name.fna  -s $tRNA/${organis_name}_trna.fasta -a $LTR_Finder/ps_scan  -w2 -E -C > $ltr_table/$organis_name.table

with the $organis_name changes from one genome to another.

In some genomes I don't get this message and in some I get it.

So my question is what does this message

[aln_local_core] Cannot find reasonable band width. Continue anyway?

mean and if the tools continue anyway, would that affect the result?