Dear all! I have plot my data to make gene position in chromosome using chromoMap.
Here my data
chr file
chr anot file
library(chromoMap) col.set = c("purple", "#4CBB17","#0096FF", "blue", "brown") chr.data <- read.csv("chr_file.csv", header=T) anno.data <- read.csv("chr_anot.csv", header = T) chromoMap(list(chr.data),list(anno.data), labels = T, data_based_color_map = T, data_color = list(c(col.set)))
I got the result like this output file
I would like to set every gene with different color and add the legend.
Any idea what should I do? Please help me. Thank you
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written
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amirandi1808 •
I have tried to see the link that you sent above and run your script but the output like this,
Try this great tutorial, you can do it. https://cran.r-project.org/web/packages/chromoMap/vignettes/chromoMap.html#Labellings
and https://lakshay-anand.github.io/chromoMap/docs.html#Title
How about Annotation colors flag?
anno_col = c ("purple", "#4CBB17","#0096FF", "blue", "brown")
thank you sir
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