Burden Test: rvatk (Rare Variant Analysis Toolkit)
Hi everybody,
I am using this R library https://rdrr.io/github/Halvee/rvatk/man/BurdenTest.html to execute a burden test on a set of genes. I cannot find any examples on internet, can anybody suggest me what kind of results should I obtain ?
I have also performed a burden test using Skat package and I obtained a list of genes with their p-values. But here I only obtain a text file with some information like this:
n.case.qual
[1] 0
n.case.nonqual
[1] 1
n.ctrl.qual
[1] 0
n.ctrl.nonqual
[1] 1
odds.ratio
odds ratio
0
conf.int.lower
[1] 0
conf.int.upper
[1] Inf
p.value
[1] 1
method
[1] "Fishers.Exact.Test.for.Count.Data"
alternative
[1] "two.sided"
• 1,352 views
•
link
0 answers
No answers yet.
Log in to answer this question.