What is the best way to generate snp list from reference genomes from NCBI?

If I download all the reference genomes of a certain bacteria species from refseq or genbank, how should I go about generating a table listing of snps for the bacteria species?

snps

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updated 3.5 years ago by Ram

• written 4.9 years ago by gatheringdusthere •

did you try using bcftools? they have a function query and you can select the SNP

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written 4.9 years ago by raalsuwaidi •

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