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OMA speed

Is there any way to speed up the execution without using parallel processes? The parallel execution does not run well on the system I access.

My goal is to compute orthologs between two species, one having 55,725 transcripts, and the other 91.249.

It is taking several weeks.

orthology oma
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updated by Adrian Altenhoff Adrian Altenhoff • written by af1065 • af1065

1 answer

Hi, not sure which system you are using, but detailed explanation on how to use oma standalone with different schedulers are given here: https://omabrowser.org/standalone/#schedulers

Cheers Adrian

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written by Adrian Altenhoff Adrian Altenhoff

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