Package or tool to find annotations for *Candida albicans* in R · Biostar

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Package or tool to find annotations for *Candida albicans* in R

Is there a package or tool to find annotations for microarray probes of Candida albicans in R, like what we have for Homo sapiens (hsapiens_gene_ensembl) in biomaRt for mapping probe ids to its corresponding gene symbol ?

candida biomart probe r

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updated 4.9 years ago by hafiz.talhamalik

• written 4.9 years ago by Khushal •

not sure about R. but can use prokka for annotation in linux

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written 4.9 years ago by hafiz.talhamalik

Thanks for your suggestion. I read about prokka, it is used to annotate the contigs. I have microarray intensity data that is available on GEO Datasets. Example: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE64383. I want to know if there are any packages available for annotation of the probes used in these experiments.

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written 4.9 years ago by Khushal •

well m not sure about that..!!

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written 4.9 years ago by hafiz.talhamalik

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