Manhattan Plot in R with 100 non-numeric contigs and chromosomes
Hello, I have PLINK assoc file with 67 chromosomes and many contigs ( all of them non-numeric ).
How can I create a Manhattan Plot?
contigs
chromosomes
r
manhattan
non-numeric
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Manhattan is just a scatter plot, sort by CHR and BP, then add a row number, then plot. x as rownumber y as -log10(P).