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Forum: How to calculate LDDT score for protein structure ?

I am using molecular dynamic simulation and would like to measure LDDT score for protein structure. There is an online server for doing this but I couldn't find any python code to do it as I am using an open-source molecular simulation. Is there any python code to do this?

lddt pbd
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updated by lslb • lslb • written by aaggencc • aaggencc

1 answer

No python code that I am aware of, but Linux and MacOS binaries can be downloaded from the two links below.

Maybe you'd want to read this as well:

https://swissmodel.expasy.org/lddt/downloads/

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written by Mensur Dlakic Mensur Dlakic

Thank you so much for replying. Especially do you know any place where to calculating IDDT score for complex proteins?

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written by aaggencc • aaggencc

Is that correct that lDDT only calculate the first chain? So do you need to assign the complex with a same chain ID?

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written by lslb • lslb

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