EnsemblVEP could not generate any output for a list of frameshift insertion input

Dear all,

I am trying to use EnsemblVEP for a list of FrameShiftInsertions.

However, VEP produces empty tables.

The header of my input:

22  41257114    41257115    -/T +
1   237540701   237540702   -/CA    +
2   71592562    71592563    -/A +
4   68379975    68379976    -/T +
17  77808750    77808751    -/G +
1   185986178   185986179   -/C +
2   21231201    21231202    -/A +

Can anybody help me to solve this problem?

Regards

Nazanin

frame_shift_insertion ensemblvep

• 984 views • link

written 5.0 years ago by nazaninhoseinkhan

1 answer

Hi every one!

I found the solution.

With replacing the "Start" and the "End" columns with each other, VEP produced the result.

• 0 views • link

written 5.0 years ago by nazaninhoseinkhan