GSEA error 1005
Hello
I am trying to analyze human gene sets for their expression in tumor. I am facing an error saying "The collapsed dataset was empty when used with chip:ftp.broadinstitute.org://pub ..."
.cls file:
.gct file:
Error:
Could someone please help me understand what could be causing this error? and how could I successfully analyze my data.
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komalkharat12345 •
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komalkharat12345 •
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Do you really need to use the collapse option? I mean if it is data for human samples and you already have gene symbols as the input, why don't you select the
no_collapseoption?And one more thing if you are selecting the
collapseoption you have to select the appropriate chips option and in your case, I guess it should beHuman_Gene_Symbol_*