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Appropriate genome reference for converting TCGA VCF files to MAF
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Question regarding CAGE and UCSC promoters and enhancers
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Downloading data from 1000Genomes
written by peter 2I need to download vcf files for all chromosomes from 1000Genomes from the following link: [1000Genome dataset][1] If you click on **'1000 Genomes on GRCh38'** …
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Extracting specific cancer types from MAF (Mutation Annotation Format) files from TCGA(The Cancer G…
written by peter 2I am new to bioinformatics therefore, I apologise I have two basic questions. But I have a MAF file. It is mutational information available for …
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TCGABioLinks getManifest() function. How to alter saved file name?
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written by a.james 24Hello All, I have exon datasets (aligned BAM) files downloaded. I now need the metadata information for the same samples. How can I download or …
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Tutorial: Protocol To Downlad TCGA Data From GDC
written by Shicheng Guo 963Now that TCGA moved under Genomic data commons (GDC), Almost all the prevous user are struggling to retrive the same information. This tutorial try to …
If they are available then they would likely be at the legacy GDC.
Thank you for you reply. Yes I figured that out too. But legacy GDC won't let me enter a list barcodes unlike the current GDC. I will just liftover instead.