Splitting predicted transcripts according to ORF coordinates
I have the following situation, 3 ORFs contained in a single transcript (assembled using StringTie). I have tried different custom parameters for the transcript assembly to reduce this "redundancy" but nothing worked for some regions. I don't want to reinvent the wheel, so before writing a script (I have thousands of similar cases) to split those transcripts using the ORF coordinates, I was wondering if you have any suggestions, is there any tool to manage this?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
StringTie filtering settings
written by Sarah •
-
Transferring Gene Annotations from Assembly with Large Duplications
written by Charles Warden
-
Novel transcripts from monoculture RNAseq applied to tissue-level RNAseq
written by matt.a.bennett25890 •
-
RNAseq consensus transcript sequence
written by Neuls •
-
De novo RNA-seq
written by blawney •
-
Completely confused about terminology and what I'm actually analysing here
written by l.burke.1 •
-
Alternate allele bias in RNA-seq data?!?!?!
written by mdgallagher71 •
