Differential expression of microRNAs
I did my RNA-seq data analysis by using miRDeep2 for microRNA . after running i got table in which miRNA name and their read count in given for my control as well as for treatment. Now i want to identify differentally expressed microRNA in my data ,i tried to use edgeR and DEFSeq2 and but unable to use it . Can anyone help me with some tutorial orby providing commands for this. Thank you in advance
- List item
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Is total miRNA in EV constant? Implications for library size normalization.
written by Thomas.H.Hampton •
-
Alternatives to mirBase for mirDeep2 Input
written by Jack •
-
How to merge miRDeep2 counts for DeSeq2 analysis?
written by MS •
-
Error in running miRDeep2
written by DEEPESH •
-
Can use log(CPM) of Pairwise comparison as expression level?
written by star
-
Differential analysis with replicates using edgeR
written by Vasu
-
sRNA analysis by miRdeep2
written by mahfuz.290066 •
-
Which read counts file from miRDeep2 should be considered for differential expression analysis?
written by bioinforesearchquestions
-
Co-expression network for two time courses RNA-seq data
written by xieshaojun0621
-
mirdeep2 error in sequence file
written by kamyasingh2490 •
