Divide the genome to vary lengths windows in R
Hi,
I have BED file with vary windows lengths, and I want to divide the whole genome to non-overlapping bins in same lengths distribution of the BED file in R.
For example, if the chromosome length is 50, and the windows lengths are 10,10,20 , the output should be:
chr1 1 10
chr1 11 20
chr1 21 40
chr1 41 50
Any suggestions?
Thank you!
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rrapopor •
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Rashedul Islam
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Can you add a representative example?
I added to the question.
These windows are not indexed correctly for the BED format, and are not of the same length distribution.