read ids along with transcript ids

Question

[akanksha.srivastava]

Hi,

I am interested in getting the read ids that are assigned to a particular transcript id for nanopore reads after using tools such as FLAIR (https://github.com/BrooksLabUCSC/flair) or stringtie (https://github.com/gpertea/stringtie) for read correction. Is there an easy way to get that.

Thanks

Answer 1

[Shred]

Your question was already answered here:

Extract Reads From A Bam File That Fall Within A Given Region