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Emperical frequencies in BEAST2
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12 days ago

Do you know how to specify the emperical frequencies of amino acids in BEAST? I didn't find this option in BEAST and was advised to use BEAST2. I know from tutorials that this option should be in the "subset model" area but it doesn't. Are there packages for this purpose or another solution?

For me is more convenient to use BEAST for my analysis than other software for Bayesian phylogenetics.

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