Hi everyone,

I want to download data from NCBI, I want to do a similar query and to retrieve the data, in the way I can store in three different dataframe the phenotypical information, the expression matrix and clinical information.

I normally do this in R, but I want to do this in python.

# example R code I normally use
library("GEOquery")
GSE94499 <- getGEO('GSE94499', GSEMatrix=TRUE)
gse <- GSE94499$GSE94499_series_matrix.txt.gz
ch <- pData(gse) #retrieve clinical information
f <- fData(gse) #retrieve phenotypical information
y <-exprs(gse) #retrieve expression matrix

do you know any library to do this in python? Can you provide a sample code?

thank you very much for your help