Size factor between bcl and fastq
What is very roughly the size factor between bcl and the basecalled fastq files? Novaseq 6000.
bcl
ngs
illumina
fastq
• 3,423 views
•
link
updated
by
Arup Ghosh
•
written
by
Michael
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Merging two sequencing datasets
written by laura.bertola •Hi all, I have sequenced some samples years ago on a Novaseq 6000. Now, I want to explore some other options for which I need …
-
question about illumina adapter sequences
written by Meghan.T •Hi guys I got my hands on a data sequenced with NovaSeq 6000 . It is a little silly but I am not sure what …
-
Novaseq 6000 vs Novaseq X+
written by KH •Our sequencing core is planning on upgrading from the Novaseq 6000 to Novaseq X Plus There is obviously a substantial price drop per lane and …
-
EGA (ENA) database wont accept fastq files
written by heskett •hi folks, I keep getting this error despite clearly uploading two files per library for paired end fastq In run, alias:"ena-RUN-TAB-24-05-2022-00:14:25:828-37227", accession:"". In run(ena-RUN-TAB-24-05-2022-00:14:25:828-37227) Paired …
-
Comparing Two Fastq Files Linux
written by joe_genome •Hello community, I've read different methods on using linux commands such as **diff** to compare the content between text files, was trying to apply this …
-
Shrunk data from Novogene
written by Futuremaking •I have sequenced a few samples using hiseq4000 at Novogene. Standard output size is expected to be at least 150G/lane. I got only ~70G. Novogene's …
-
Minion RNA-seq local basecalled .fast5 dataset
written by adeline •Does anyone have or know where I can find Minion ONT 1D RNA-seq local basecalled .fast5 dataset? I'm working on developing a pipeline for differential …
-
Novaseq 6000 paired end data Trimming and clipping
written by ignazio.fontana •Hi, I have 6 couples of paired end libraries (rnaseq) from Novaseq 6000. It is the first time I work with this kind of data; …
-
Is it possible to multiplex mora than 384 samples on Novaseq 6000 for a very low pass (0.5-10x) WGS…
written by BiomedIs it possible to multiplex mora than 384 samples on Novaseq 6000 for a very low pass (0.5-10x) WGS?
-
News: Illumina unveils NovaSeq 5000 and 6000
written by supportToday, Illumina launched two new instruments that promise higher outputs by further reducing the spacing between nanowells, increasing cluster density. Instrument specifications are summarized here: …
If you don't want to know any particular case (pe/se or flowcell type) the difference is around 600GB for an S4 flowcell run.
Thanks! What size factor is this roughly for the example you have in mind? (sizeFastQ / size BCL)
The total size of fastqs (gzip compressed) ~1.8 TB and BCL files ~1.2 TB.