Error in loading R package maEndToEnd using BiocManager
I am using this to install maEndToEnd package-
BiocManager::install("maEndToEnd", version = "devel")
It is showing-
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.13 (BiocManager 1.30.13), R 4.1.0 beta (2021-05-06 r80268)
Installing package(s) 'BiocVersion', 'maEndToEnd'
also installing the dependencies ‘formatR’, ‘lambda.r’, ‘futile.options’, ‘RCurl’, ‘GenomeInfoDbData’, ‘base64’, ‘htmlwidgets’, ‘futile.logger’, ‘snow’, ‘BH’, ‘fastmatch’, ‘tweenr’, ‘polyclip’, ‘RcppEigen’, ‘RcppArmadillo’, ‘backports’, ‘colorspace’, ‘patchwork’, ‘lazyeval’, ‘GenomeInfoDb’, ‘XVector’, ‘MatrixGenerics’, ‘DelayedArray’, ‘iterators’, ‘bit64’, ‘blob’, ‘plogr’, ‘bit’, ‘KEGGREST’, ‘gcrma’, ‘hexbin’, ‘BeadDataPackR’, ‘illuminaio’, ‘Formula’, ‘gridExtra’, ‘data.table’, ‘htmlTable’, ‘viridis’, ‘htmltools’, ‘base64enc’, ‘png’, ‘jpeg’, ‘systemfonts’, ‘BiocParallel’, ‘DO.db’, ‘fgsea’, ‘ggforce’, ‘ggrepel’, ‘tidygraph’, ‘graphlayouts’, ‘checkmate’, ‘bitops’, ‘farver’, ‘labeling’, ‘munsell’, ‘viridisLite’, ‘xtable’, ‘ape’, ‘aplot’, ‘tidytree’, ‘treeio’, ‘BiocGenerics’, ‘IRanges’, ‘GenomicRanges’, ‘SummarizedExperiment’, ‘Biostrings’, ‘affyio’, ‘foreach’, ‘S4Vectors’, ‘RSQLite’, ‘DBI’, ‘ff’, ‘XML’, ‘AnnotationDbi’, ‘org.Hs.eg.db’, ‘affxparser’, ‘preprocessCore’, ‘zlibbioc’, ‘affy’, ‘affyPLM’, ‘beadarray’, ‘gridSVG’, ‘Hmisc’, ‘hwriter’, ‘latticeExtra’, ‘setRNG’, ‘vsn’, ‘svglite’, ‘graph’, ‘GO.db’, ‘SparseM’, ‘DOSE’, ‘ggraph’, ‘reactome.db’, ‘igraph’, ‘graphite’, ‘downloader’, ‘GOSemSim’, ‘plyr’, ‘qvalue’, ‘rvcheck’, ‘gtools’, ‘caTools’, ‘gtable’, ‘isoband’, ‘scales’, ‘annotate’, ‘generics’, ‘tidyselect’, ‘cpp11’, ‘cowplot’, ‘reshape2’, ‘scatterpie’, ‘shadowtext’, ‘ggtree’, ‘Biobase’, ‘oligoClasses’, ‘ArrayExpress’, ‘pd.hugene.1.0.st.v1’, ‘hugene10sttranscriptcluster.db’, ‘oligo’, ‘arrayQualityMetrics’, ‘limma’, ‘topGO’, ‘ReactomePA’, ‘clusterProfiler’, ‘gplots’, ‘ggplot2’, ‘geneplotter’, ‘pheatmap’, ‘RColorBrewer’, ‘dplyr’, ‘tidyr’, ‘matrixStats’, ‘genefilter’, ‘openxlsx’, ‘Rgraphviz’, ‘enrichplot’
I am using R version R-4.1.0beta. How to solve this issue?
Thank you in advance.
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1 answer
Hi, please see the message here: https://support.bioconductor.org/p/9136957/#9136957
Kevin
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