How to find single copy genes from OrthoFinder output
I would like to find single copy orthologs. I got 140 single copy orthogrops with all the species present but i would like to find other single copy orthogroups where there are some missing species. How do I find those single copy orthogroups where some species are missing.
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Dunois •
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abhisheknayak389 •
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If you're using the latest version of
OrthoFinderall orthogroups containing (or corresponding to sets of ) single copy orthologs should be listed in theSingle_Copy_Orthologue_Sequencesdirectory. It shouldn't really matter what species are involved in the analysis.