How to achieve the goal "only genes with non-zero expression values in at least half of the sample type were kept"
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3.0 years ago
zhangzd168 • 0

I am a freshman in the field of bioinformatics analysis. I have downloaded the TCGA RNA seq Counts data for further analysis. The first step I want to do is screening only genes with non-zero expression values in at least half of the sample type like some papers do. But I don't know how to achieve this in R. Thank you!

RNA-seq TCGA • 963 views
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Next time, try to google the question. When you google "x columns greater than zero", the first solution that appears is this, that is exactly what you are looking for.

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Thank you so much!

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