Find the publication of the dataset available in NCBI's SRA Library
I am looking for the article for this dataset https://www.ncbi.nlm.nih.gov/sra/SRX10663917[accn]. This dataset was published a few days back, but I cannot find the link to its article through SRA. I have also searched bioRxiv.org but got no leads. Any help would be much appreciated.
1 answer
It looks like the data is not yet crosslinked - perhaps the paper is under review or not yet published.
If the data were crosslinked you can find the linked publications with:
esearch -db sra -query SRR519926 | elink -target pubmed | efetch --format docsum> results.xml
then:
cat results.xml | xtract -pattern DocumentSummary -element Id,PubDate,Title
to print:
22829535 2012 Nov Finished bacterial genomes from shotgun sequence data.
19796385 2009 ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads.
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Istvan Albert
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I don't think there is an automated process that associates SRA datasets with publications. It is the responsibility of the submitters to provide this information. Your best bet is to email the submitters and ask.