Creating phylogenetic trees for a full genome at once?
Hi,
I have a genome with a thousand genes or so. I’d like to build a maximum likelihood tree for each gene (meaning I’d like to blast each gene against the NCBI NR and take all good homologs then construct a tree for each of the genes).
There used to be a program for this called Phylogenie - but that was a long time ago and it was based on now obsolete programs like formatdb . I wonder if there is any new program that does this?
Any help would be greatly appreciated
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Using blast to find homologs between two species
written by Chris •
-
Convert GTDB database to blast database
written by emi •
-
Is it possible to create a phylogenetic tree based on 10 proteins per organism
written by Juliana •
-
how to select reference when constructing a SNP-based phylogenetic tree
written by zhangdengwei
-
Dropping random tips and adjusting branch lengths and branching order for ML phylogeny (many times)
written by ConnorChato •
-
calculating consensus tree phylogeny
written by Moses
-
Core genome Multilocus sequence analysis and phylogenetic tree heat map
written by nepgorkhey
-
Maximum likelihood user tree analysis in MEGA !
written by morteza.mahmoudisaber
-
Automated Phylogenetic Tree Construction From Every Gene In A Genome?
written by sentausa
-
Phylogenetic Tree Inference Of Rna Sequences With Covariance Substitution Models
written by Peter •
