Were can find a download page of the 'nr. Non-redundant GenBank CDS translations + PDB + SwissProt + PIR + PRF, excluding those in env_nr.' in FASTA format as used e.g. for BLAST-ing on NCBI website, https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome?
Thanks GenoMax, but how do I paste it together to use with local BLAST? Usually, after downloading e.g. UniProt, I would jus do
makeblastdb.exe -in .\uniprot-reviewed_yes_5species.fasta -dbtype prot
following (https://angus.readthedocs.io/en/2019/running-command-line-blast.html). Btw, I work on Windows.
And, if that helps, I am interested in human sequences ONLY!
You do not need to paste them together. Just uncompress all files and keep them in one folder. makeblastdb is used to create blast indexes. These are already made so you don't need to do that step.
If you only need human proteins then you could get human protein sequneces (LINK) and create a blast index just for those using makeblastdb.
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