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3.0 years ago
Digimon
•
0
After running minimap2 aligning .fastq to index .mmi creating .bam and pipeing the result into samtools view the above error ensues. What can I do abou it?
What is the exact command you used?
minimap2 -t 40 -ax splice -k14 -u f --secondary=no input.mmi othr_input.fastq.gz | samtools view -Sb > othr_input.bam