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Installing SRAToolKit

Hi there, I am a complete newbie and trying to learn some of the basics. I need to install the SRAToolKit (https://ftp.ncbi.nlm.nih.gov/pub/factsheets/HowTo_LocalSRABlast_StepByStep.pdf) and cannot for the life of me figure this out. I am following their step by step using the Linux Ubuntu App. I downloaded the file using wget but when I go to use tar to uncompress it the file is a unicode text? I downloaded the "Ubuntu Linux 64 bit architecture - non-sudo tar archive." Anyone have any idea what I should do next to get this installed? I am on windows 10.

Picture of the problem

programming general
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updated by newbio17 newbio17 • written by hoffmavl1 • hoffmavl1 
tar -zxf sratoolkit.tar.gz
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written by MatthewP MatthewP

2 answers

You will likely have to download the file again. Try from a web browser by right-hand clicking and choosing Save link as... from the dropdown menu. Other than that, you seem to be doing everything right. Make sure to put unpacked files into a directory that is defined in $PATH variable, and that should be all the installation needed.

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written by Mensur Dlakic Mensur Dlakic

You could also invest some time looking into conda and its best practices. Once you have set it up, it's as simple as:

conda install -c bioconda sra-tools

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written by newbio17 newbio17

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