I want to reverse the fasta sequence
I have a large file and I want to reverse the fasta sequence. Please can anyone tell how to do it Thanks in advance
fasta
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Istvan Albert
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harry •
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written by harry •>ENST00000014935 TAGGTTTTTAATTACCTTTATTTTATTTTGCCAAACATACCTGGGAATACCTTTTATTTTTTTTTTACCTTGGGGTGATGGTTCCAAACCATAAATGTGATTATAGTTAACACATGACCCTTCTAGCGTCCCAGCCAGTGTTTTTCCTGACCTCTCTTCTTTGGAGAGGAGGATGGAAGGGAGGGGTCCGGCATGCTGCTGGCATTTTGCTGTGTCCTGCAGCCCCTTTCCGGGACACCTGGGTTCACACAGCTTTTTAGCTTACATAACTGGTGCAGATTTTCTGTGTGGAGATGTTGCCTTGACCAGCCTTGGCTGGACTTTACCAGGCATGCAGAAGCCTGTACCAACACAGACTACAGCACCCAGGAGGTGCGAGTGTGGCTGCTCAGCGGTTATAACAGGCCTGACTGCATTGTTCACCGGATTATAATGAGCCAAAATGTTTCCCGGTGTTTGCTGGTTTCAGGGAAGGAGTTTGATATAGCAGATTAACCACCCTCCTTGTAGCTATTGGGGCTTAATGGTTTCCTGGTGATTCTTACCAATCCACAATAAACATGGCCCATTGGCATATCTGCTGCACAAGTGTCCTATCTCACCAATCTGGGTTTTTGTTCTCAGTAACTTTCCTTCTTGTCATACAACATCTTCATTCCTCTTTCTGAACCCTCCCTTCCCCTACCCCAACCCAGAGCCCACTTTGTCTCCACTCCTGATACTACACTACCTGGCAGGTGGCATGAGTGCAGGGCCCCTGGCTTCCTCTCCTAATCTAGGCACAAGCCCAACCAAAGAACAAGAGCCAAATCAAACAAGGCAGGCAGGGGTGGACTACAGTCACAGGGCAACTATAGTTGAAGCCCCCCAGCCCCAGGGCTGGATGGACGGGGGAGGCTGGGGTTTAAGTCCCAAAAGGCAGCAGGCCCTGGGGGGGTAGGGGGACGCTCAGGCAGCAGGGCACAGCTGAGGGGACAGGAGTGATAGCAGCAACAGAACAGTGAGGCTGAGAGGCTGGACGCTGTGCGCCTGGCTCAGCTTCAGCTCCACCTCCACGGGGTAGTGGTCACTGATGTTGAGGGC >ENST00000014944 TCCTCCTCGGTGAGCTGGAAGCTCGTGGGGAAGTCAAAGGCAGCCGCAGTGTGCAGCAGACTCCGGCAGCGCTCCCCGTGCAGCACGACGCGGTCATAGGTGCAGTGGGTGCTGGCCCGCACTGTGGTGTCCTCCCCATCGGCAATCACCCAGTGGAAGCCTGGCTCAGTCCGCAGCTCCAGCTTGTCCAGGCGCTTTTTGGTCAGTGAAGCGCAGTCAGCATTGAAGTCCCCAAGCAGGATCACGTC Likewise, I have a huge fasta sequence and I want to reverse the sequence of those fasta sequences like below:- >ENST00000014935 …
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written by harry •>exon9_ENST00000462434|exon11_ENST00000462434|exon12_ENST00000462434|exon13_ENST00000462434|exon19_ENST00000462434|exon22_ENST00000462434|exon25_ENST00000462434| 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What have you tried so far? This is a pretty common question and lots of solutions are around for this. Did you search for a potential approach?
It's always appreciated if you show at least some effort and we'll happily help out if you have specific questions or are stuck at some point.
It is quite disrespectful to the six users interacting with you in that previous post. What is wrong with the solutions there, add comments, please do not add identical questions.
Want to reverse the fasta sequence
I know but in my inbox, there are no questions are there and I just think it's there all time but it deletes from my inbox. How the inbox are deleted if i don't delete it. Thanks
You can find your own past posts by going to your profile and then clicking on my posts link: https://www.biostars.org/u/56270/?active=posts
Please validate past solutions provided for your questions. Upvoting useful comments/accepting answers that work (green checkmark) is appropriate way to show appreciation for the help you receive here.
ok thanks
there is even a simpler link to one's own posts, it is the first element of the second smaller navbar under the logo
https://www.biostars.org/myposts/