Fetching Gene_Id Url After Ensembl Search
I am trying to fetch the urls of gene_ids after ensembl search of a gene. For example after this search:
http://bacteria.ensembl.org/Multi/Search/Results?species=all;idx=;q=ftsZ;site=ensemblunit
I would like to download all the urls like: http://bacteria.ensembl.org/salmonella_enterica_subsp_enterica_serovar_typhi_str_ct18/Gene/Summary?g=CAD01290;r=Chromosome:157097-158248;t=CAD01290
I am wondering how it can be achieved.
1 answer
Have a look at the biomaRt package in R.
• 2 views
•
link
updated
by
Ram
•
written
by
kavin.pl •
•
written
by
kavin.pl •
Log in to answer this question.
More posts like this
-
Help downloading gene descriptions using Ensembl biomart fungi portal
written by lakhujanivijay
-
How to get annoted immunoglobulin loci in Ensembl
written by wangshx •
-
Using ensembl biomart retrieving orthologous codin sequence
written by ishengomae
-
Synteny Diagram In Biopython
written by Pappu
-
Why Has2 Gene Was Not Annotated As Heterocephalus Glaber (Naked Mole-Rat) In Genebank
written by smagikern •
-
Analyzing The Expression And Regulation Of A Protein
written by Pappu
-
Predicting Biologically Significant Snps
written by Pappu
-
1000 Genome Project - Synonyms Snps
written by Maxime Lamontagne
-
Phylogenetic Tree With Dna, Binary And Multi Data - Raxml Update
written by Pavid
-
Get Ensembl Gene By Species/Strain For E. Coli
written by Jirapong •
