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How Can I Make A Gc Content Model For Hg19?

I would to make hg19.gcmodel file. I found a code online (hg19 gc model) but my result is weird. If I run on my Mac, I receive error messages then the process stops. The numbers for GC in the broken file are the same as the posted ones. If I run the code on an hpc system, the process completes but the numbers are completely different from the posted ones.

Posted:

Name           Chr  Position GC
rs144773400    1    10144    36.263736
rs201752861    1    10176    38.961039
rs201694901    1    10179    39.260739

My results:

Name            Chr  Position GC
rs144773400     1    10144   30.370370
rs201752861     1    10176   32.592593
rs201694901     1    10179   32.839506

I do not understand what is going on. Would you please advise? Thanks for your help. A

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updated by SES SES • written by alakatos • alakatos

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