Hi everyone,
I am having problems with Arlequin, since its guide it's not very clear.. How do I create a proper input file? I have SNPs data concerning 500 individuals belonging to 5 different populations.
I would really appreciate any help. Thank you very much.
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written
by
Carl •
3 answers
You can download the following perl script to transfer ped file to Arlequin input file: https://www.dropbox.com/s/nd45vy42x09tde8/transformation.pl?dl=0
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written
by
Shicheng Guo
I dont have SNP input format for Arlequin, but earlier I've worked with RAPD and SSR in Arlequin, if you think it ca help you, reply. Thanks
RAPD data in binary (1,0) format. Thanks,
I couldn't remember exactly, but there should be some example files provided by Arlequin which you can use to create you own input file.
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Hi Carl,
Did you solve the problem? I am facing the same issue? What was your original format of SNP data? VCF?
Cheers