Finding If A Gene Pair Is Paralogous And Accession Ids
Hello,
What do you recommend is a well tested method to find if a gene pair is paralogous. I have about 200 gene pairs to test so I can't really do it manually.
A friend recommended using accession IDs and using methods similar to blast. If this is the only method, I have three related questions: 1. How and from where do I download all the accession IDs for all the genes? 2. How do I take care of alternative splicing of the genes? 3. Should I simply use sequence similarity e.g. 90% to decide if the genes are paralogous?
Thanks so much in advance.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Compare alternative splicing patterns between human and mouse?
written by aboll •
-
Human proteome map, protein level expression
written by arunbodd •
-
retrieving all Human Mouse between species out-paralogs
written by Moses
-
Tools for alternative splicing of distant genes
written by User 7754
-
Finding orthologous gene within species
written by Prasad
-
How to deal with multiple probes for same gene while obtaining the co-expressed genes
written by ancient_learner
-
Ngs Data V.S Microarray Data
written by jack •
-
Database Or Source For Paralogs Of A Particular Gene
written by Wayne
-
Genes Which Only Use Exon Skipping Mode For Alternative Splicing
written by skm770 •
-
Cog Paralogous And Orthologous Classes
written by Zhe Liu •
this may be of some use What is the best method to find orthologous genes of a species? http://www.researchgate.net/post/How_to_detect_paralogs_in_a_list_of_protein_pairs_in_a_high-throughput_manner
http://asia.ensembl.org/info/genome/compara/homology_method.html