Pipeline For Hugene-1_0-St-V1 Analysis
Hi,
Could someone please suggest a tutorial/pipeline, preferably in R, for analysis of HuGene-1_0-st-v1. I have been searching all day and can't find a pipeline that will automate pre-processing to differential gene expression analysis for this array type.
Thanks in advance, Jason
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Scott Beeler •
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Jason •
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Jason •
2 answers
Take a look at the bioconductor oligo package for preprocessing and limma (or others) for differential expression.
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Sean Davis
I found this tutorial on the oligo package to be helpful for pre-processing HuGene-1_0-st-v1 arrays.
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Scott Beeler •
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