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Genome Assembly +Annotation Pipeline

Hi everyone, I am beginners in genome assembly. I need to develop a genome assembly and annotation pipeline with existing third party program. Can anyone suggest me any idea : how i will start ??

pipeline assembly annotation
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updated by Zev.Kronenberg Zev.Kronenberg • written by HG HG

2 answers

This is just personal preference, but I would do something like:

  1. ALLPATHS - or VELVET - or Your Favorite Assembler

  2. MAKER2 - http://www.biomedcentral.com/1471-2105/12/491

• 568 views • link
written by Zev.Kronenberg Zev.Kronenberg

HG, whenever I need coding idea I just search it on Github, give it a try:
https://github.com/search?q=%22genome+assembly%22&ref=cmdform

• 0 views • link
written by PoGibas PoGibas

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