Does anyone have experience of using simNGS (http://www.ebi.ac.uk/goldman-srv/simNGS/) to generate simulated Illumina reads?
I am attempting to generate a set of 5 million test reads using the human genome as input. The program seems to only generate one read (or read pair) per sequence i.e. chromosome. I have tried to find some means of altering the parameters to get more reads but I have been unsuccessful.
Can anyone advise?