More posts like this
-
News: Generalized Linear Models (GLM) course in R
written by Physalia-coursesDear all, We are excited to announce our upcoming course on Generalized Linear Models (GLM) as a Unified Framework for Data Analysis in R. This …
-
How to go from a list of one or more GO identifiers to GO categories (e.g. response to stress)
written by sheridan.christopher •<p>Hi I am currently trying to annotate my transcriptome (non-model organism) and have obtained GO identifiers through blast2GO, but I would like to obtain a …
-
differential expression based on multiple biological repeats
written by Whetting<p>Hi,</p> <p>I downloaded the raw data from the current GTEX release (<a href="http://www.gtexportal.org/home/">http://www.gtexportal.org/home/</a>). I parsed the data to get a matrix of a couple of …
-
What Dose Division Mean In Ncbi Taxonomy Database?
written by Mingkun •<p>I recently started to analyze the metagenomic data, the first problem I met is how to quickly finish the mapping. </p> <p>I was suggested to …
-
Merging Segments From Varscan2 Output...
written by sousuffer •<p>I am a little new to this so any help would be appreciated - I ran a variation of the standard example workflow for VarScan2 …
-
Organism With The Chromosome With The Largest Number Of Bases?
written by Alex Reynolds<p>To vet the genomic coordinate input going into my application, I'm trying to write sensible limits that will be agnostic about organism (hopefully remaining so, …
-
Gatk Baq And Dbsnp Option In Countvariates
written by Arun<p>Hello,</p> <p>I am trying to obtain SNP/SNVs using <code>GATK pipeline</code>. I found <a href='http://www.biostars.org/post/show/1268/what-is-the-best-pipeline-for-human-whole-exome-sequencing/#5592'>this post from biostars</a> particularly useful, which shows almost all the steps …
-
What Is A More Meaningful E-Value For 90Bp Pair-End Illumina Data?
written by Ken<p>Hi all, I used to use e-value <= 1e-5 for getting any meaningful blast alignment results. Just saw this statement in <a href='http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=FAQ'>BLAST FAQ</a></p> <p>"The …
-
How To Filter A Blast Xml Output ?
written by Manu Prestat<p>Hello list, I have very large xml blast outputs (in order to use with blast2go) and I need to reduce these consequently according to a …
-
Sliderii For Deep Coverage
written by Wjeck<p>I just looked over the <a href="http://www.ncbi.nlm.nih.gov/sites/entrez/20190250">SliderII</a> preprint in Bioinformatics and I'm wondering if anyone has had good experience with it. I'm impressed with their …